Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CRD_00703 | CRD_00704 | CRD_00703 | CRD_00704 | Superfamily II DNA/RNA helicases, SNF2 family. | Hypothetical protein. | 0.999 |
CRD_00703 | CRD_00850 | CRD_00703 | CRD_00850 | Superfamily II DNA/RNA helicases, SNF2 family. | DNA-directed RNA polymerase. | 0.963 |
CRD_00703 | rpoA | CRD_00703 | CRD_02869 | Superfamily II DNA/RNA helicases, SNF2 family. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.997 |
CRD_00703 | rpoB | CRD_00703 | CRD_00848 | Superfamily II DNA/RNA helicases, SNF2 family. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.996 |
CRD_00703 | rpoC1 | CRD_00703 | CRD_00849 | Superfamily II DNA/RNA helicases, SNF2 family. | RNA polymerase Rpb1; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.963 |
CRD_00703 | rpoC2 | CRD_00703 | CRD_00851 | Superfamily II DNA/RNA helicases, SNF2 family. | RNA polymerase Rpb1. | 0.963 |
CRD_00703 | rpoZ | CRD_00703 | CRD_02606 | Superfamily II DNA/RNA helicases, SNF2 family. | RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.991 |
CRD_00703 | rpsE | CRD_00703 | CRD_02877 | Superfamily II DNA/RNA helicases, SNF2 family. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.918 |
CRD_00703 | rpsG | CRD_00703 | CRD_00962 | Superfamily II DNA/RNA helicases, SNF2 family. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.871 |
CRD_00704 | CRD_00703 | CRD_00704 | CRD_00703 | Hypothetical protein. | Superfamily II DNA/RNA helicases, SNF2 family. | 0.999 |
CRD_00704 | CRD_00850 | CRD_00704 | CRD_00850 | Hypothetical protein. | DNA-directed RNA polymerase. | 0.963 |
CRD_00704 | rpoA | CRD_00704 | CRD_02869 | Hypothetical protein. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.997 |
CRD_00704 | rpoB | CRD_00704 | CRD_00848 | Hypothetical protein. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.996 |
CRD_00704 | rpoC1 | CRD_00704 | CRD_00849 | Hypothetical protein. | RNA polymerase Rpb1; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.963 |
CRD_00704 | rpoC2 | CRD_00704 | CRD_00851 | Hypothetical protein. | RNA polymerase Rpb1. | 0.963 |
CRD_00704 | rpoZ | CRD_00704 | CRD_02606 | Hypothetical protein. | RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.991 |
CRD_00704 | rpsE | CRD_00704 | CRD_02877 | Hypothetical protein. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.918 |
CRD_00704 | rpsG | CRD_00704 | CRD_00962 | Hypothetical protein. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.871 |
CRD_00850 | CRD_00703 | CRD_00850 | CRD_00703 | DNA-directed RNA polymerase. | Superfamily II DNA/RNA helicases, SNF2 family. | 0.963 |
CRD_00850 | CRD_00704 | CRD_00850 | CRD_00704 | DNA-directed RNA polymerase. | Hypothetical protein. | 0.963 |
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