STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRD_00892Conserved hypothetical protein. (617 aa)    
Predicted Functional Partners:
CRD_02486
Succinate dehydrogenase/fumarate reductase iron- sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 0.978
CRD_00254
Respiratory-chain NADH dehydrogenase domain protein, 51 kDa subunit.
   
 
 0.975
CRD_01080
Hypothetical protein.
  
 
 0.970
CRD_02195
Ferredoxin (flavodoxin) oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
  
 
 0.966
gcvP
Aromatic amino acid beta-eliminating lyase/threonine aldolase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
  
 0.759
gltA
2-methylcitrate synthase/citrate synthase II; Belongs to the citrate synthase family.
  
 0.758
CRD_00824
succinyl-CoA synthetase beta chain.
  
 0.737
CRD_01784
Conserved hypothetical protein.
  
     0.718
CRD_02221
Conserved hypothetical protein.
  
     0.715
CRD_00825
CoA-binding protein.
  
 0.712
Your Current Organism:
Raphidiopsis brookii
NCBI taxonomy Id: 533247
Other names: R. brookii D9, Raphidiopsis brookii D9, Raphidiopsis sp. D9
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