STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRD_01032Conserved hypothetical protein. (388 aa)    
Predicted Functional Partners:
CRD_01031
Conserved hypothetical protein.
     0.931
CRD_02739
Hypothetical protein.
     0.789
CRD_02419
Conserved hypothetical protein.
     0.778
CRD_01703
Conserved hypothetical protein.
 
     0.775
CRD_02740
Conserved hypothetical protein.
     0.774
CRD_01704
Secretion protein HlyD.
  
    0.734
CRD_01706
Conserved hypothetical protein.
  
     0.713
CRD_00997
Bacteriocin-processing peptidase. Cysteine peptidase.
  
     0.682
CRD_00998
Hypothetical protein.
  
    0.676
CRD_01705
Bacteriocin-processing peptidase. Cysteine peptidase. MEROPS family C39.
  
     0.673
Your Current Organism:
Raphidiopsis brookii
NCBI taxonomy Id: 533247
Other names: R. brookii D9, Raphidiopsis brookii D9, Raphidiopsis sp. D9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.