STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRD_01108Probable ATP-dependent Clp protease ATP-binding subunit. (102 aa)    
Predicted Functional Partners:
CRD_01109
Probable ATP-dependent Clp protease ATP-binding subunit; Belongs to the ClpA/ClpB family.
     0.964
CRD_01743
Heat shock protein DnaJ-like protein.
  
  0.829
CRD_00239
Heat shock protein DnaJ-like protein.
   
  0.795
CRD_01192
Heat shock protein DnaJ-like protein.
   
  0.795
CRD_01582
Heat shock protein DnaJ-like protein.
   
  0.795
CRD_01988
Heat shock protein DnaJ-like protein.
   
  0.795
CRD_02510
Heat shock protein DnaJ.
   
  0.795
CRD_02511
Hypothetical protein.
   
  0.795
clpP
Peptidase S14, ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
   
  0.722
CRD_01199
Hypothetical protein; Belongs to the peptidase S14 family.
   
  0.722
Your Current Organism:
Raphidiopsis brookii
NCBI taxonomy Id: 533247
Other names: R. brookii D9, Raphidiopsis brookii D9, Raphidiopsis sp. D9
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