rps21-2 protein (Raphidiopsis brookii) - STRING interaction network

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Score

rps21-2

Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (59 aa)

Predicted Functional Partners:

rps20

0.992

rps16

0.992

rpsR

0.991

CRD_00653

0.991

rps15

0.991

rpsB

0.991

rpsF

0.991

CRD_00961

0.990

rpsJ

0.989

rpsD

0.984

Your Current Organism:

Raphidiopsis brookii

NCBI taxonomy Id: 533247
Other names: R. brookii D9, Raphidiopsis brookii D9, Raphidiopsis sp. D9

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRD_00653	CRD_00961	CRD_00653	CRD_00961	Cold-shock DNA-binding domain protein.	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.998
CRD_00653	rps15	CRD_00653	CRD_02474	Cold-shock DNA-binding domain protein.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.997
CRD_00653	rps16	CRD_00653	CRD_02773	Cold-shock DNA-binding domain protein.	Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.993
CRD_00653	rps20	CRD_00653	CRD_00846	Cold-shock DNA-binding domain protein.	Ribosomal protein S20p; Binds directly to 16S ribosomal RNA.	0.992
CRD_00653	rps21-2	CRD_00653	CRD_01207	Cold-shock DNA-binding domain protein.	Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.991
CRD_00653	rpsB	CRD_00653	CRD_02964	Cold-shock DNA-binding domain protein.	Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.997
CRD_00653	rpsD	CRD_00653	CRD_01518	Cold-shock DNA-binding domain protein.	Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.996
CRD_00653	rpsF	CRD_00653	CRD_02971	Cold-shock DNA-binding domain protein.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.995
CRD_00653	rpsJ	CRD_00653	CRD_00965	Cold-shock DNA-binding domain protein.	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.996
CRD_00653	rpsR	CRD_00653	CRD_00134	Cold-shock DNA-binding domain protein.	Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.995
CRD_00961	CRD_00653	CRD_00961	CRD_00653	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	Cold-shock DNA-binding domain protein.	0.998
CRD_00961	rps15	CRD_00961	CRD_02474	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999
CRD_00961	rps16	CRD_00961	CRD_02773	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.999
CRD_00961	rps20	CRD_00961	CRD_00846	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	Ribosomal protein S20p; Binds directly to 16S ribosomal RNA.	0.997
CRD_00961	rps21-2	CRD_00961	CRD_01207	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.990
CRD_00961	rpsB	CRD_00961	CRD_02964	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.999
CRD_00961	rpsD	CRD_00961	CRD_01518	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.999
CRD_00961	rpsF	CRD_00961	CRD_02971	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.999
CRD_00961	rpsJ	CRD_00961	CRD_00965	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.999
CRD_00961	rpsR	CRD_00961	CRD_00134	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.998