STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRD_01256TPR repeat protein. (274 aa)    
Predicted Functional Partners:
CRD_01796
Serine/Threonine protein kinase.
    
  0.968
CRD_02086
TPR repeat protein.
  
  
  0.893
CRD_00034
TPR repeat protein.
 
  
 
0.871
CRD_02048
ABC transporter-like protein.
  
  
  0.801
CRD_01163
Tetratricopeptide TPR_3.
  
  
  0.794
CRD_02049
Permease YjgP/YjgQ.
  
  
  0.791
CRD_00899
Multi-sensor Hybrid Histidine Kinase.
     
 0.715
CRD_01036
Hypothetical protein.
 
  
 
0.712
CRD_00893
TPR repeat protein.
  
  
 
0.707
CRD_02400
TPR repeat protein.
 
  
 
0.707
Your Current Organism:
Raphidiopsis brookii
NCBI taxonomy Id: 533247
Other names: R. brookii D9, Raphidiopsis brookii D9, Raphidiopsis sp. D9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.