Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CRD_00549 | CRD_02329 | CRD_00549 | CRD_02329 | Protein pucC. | Geranylgeranyl reductase. | 0.630 |
CRD_00549 | CRD_02497 | CRD_00549 | CRD_02497 | Protein pucC. | Chlorophyll synthetase. | 0.666 |
CRD_00549 | CRD_02744 | CRD_00549 | CRD_02744 | Protein pucC. | Magnesium protoporphyrin O-methyltransferase. | 0.604 |
CRD_00549 | CRD_02989 | CRD_00549 | CRD_02989 | Protein pucC. | Coenzyme F420 hydrogenase/dehydrogenase beta subunit-like protein. | 0.716 |
CRD_00549 | acsF | CRD_00549 | CRD_01316 | Protein pucC. | Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family. | 0.775 |
CRD_00549 | chlB | CRD_00549 | CRD_01039 | Protein pucC. | Light-independent protochlorophyllide reductase, B subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (ChlN-ChlB) is the catalytic component of the complex. | 0.795 |
CRD_00549 | chlN | CRD_00549 | CRD_01342 | Protein pucC. | Light-independent protochlorophyllide reductase, N subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (ChlN-ChlB) is the catalytic component of the complex. | 0.815 |
CRD_00549 | nifH | CRD_00549 | CRD_01340 | Protein pucC. | Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP. | 0.786 |
CRD_00773 | CRD_02497 | CRD_00773 | CRD_02497 | Conserved hypothetical protein. | Chlorophyll synthetase. | 0.782 |
CRD_00773 | CRD_02989 | CRD_00773 | CRD_02989 | Conserved hypothetical protein. | Coenzyme F420 hydrogenase/dehydrogenase beta subunit-like protein. | 0.493 |
CRD_00773 | nifH | CRD_00773 | CRD_01340 | Conserved hypothetical protein. | Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP. | 0.686 |
CRD_02329 | CRD_00549 | CRD_02329 | CRD_00549 | Geranylgeranyl reductase. | Protein pucC. | 0.630 |
CRD_02329 | CRD_02497 | CRD_02329 | CRD_02497 | Geranylgeranyl reductase. | Chlorophyll synthetase. | 0.908 |
CRD_02329 | CRD_02744 | CRD_02329 | CRD_02744 | Geranylgeranyl reductase. | Magnesium protoporphyrin O-methyltransferase. | 0.819 |
CRD_02329 | CRD_02989 | CRD_02329 | CRD_02989 | Geranylgeranyl reductase. | Coenzyme F420 hydrogenase/dehydrogenase beta subunit-like protein. | 0.748 |
CRD_02329 | acsF | CRD_02329 | CRD_01316 | Geranylgeranyl reductase. | Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family. | 0.790 |
CRD_02329 | chlB | CRD_02329 | CRD_01039 | Geranylgeranyl reductase. | Light-independent protochlorophyllide reductase, B subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (ChlN-ChlB) is the catalytic component of the complex. | 0.810 |
CRD_02329 | chlN | CRD_02329 | CRD_01342 | Geranylgeranyl reductase. | Light-independent protochlorophyllide reductase, N subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (ChlN-ChlB) is the catalytic component of the complex. | 0.802 |
CRD_02329 | nifH | CRD_02329 | CRD_01340 | Geranylgeranyl reductase. | Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP. | 0.780 |
CRD_02364 | nifH | CRD_02364 | CRD_01340 | Molybdate ABC transporter, permease protein. | Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP. | 0.907 |
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