Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CRD_01349 | CRD_01470 | CRD_01349 | CRD_01470 | Hypothetical protein. | HAD-superfamily hydrolase subfamily IIIA. | 0.425 |
CRD_01435 | CRD_01470 | CRD_01435 | CRD_01470 | Putative uncharacterized protein. | HAD-superfamily hydrolase subfamily IIIA. | 0.406 |
CRD_01435 | CRD_02323 | CRD_01435 | CRD_02323 | Putative uncharacterized protein. | GTP-binding protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 0.407 |
CRD_01435 | mrnC | CRD_01435 | CRD_00515 | Putative uncharacterized protein. | Ribonuclease III; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.479 |
CRD_01469 | CRD_01470 | CRD_01469 | CRD_01470 | Small GTP-binding protein domain protein. | HAD-superfamily hydrolase subfamily IIIA. | 0.507 |
CRD_01470 | CRD_01349 | CRD_01470 | CRD_01349 | HAD-superfamily hydrolase subfamily IIIA. | Hypothetical protein. | 0.425 |
CRD_01470 | CRD_01435 | CRD_01470 | CRD_01435 | HAD-superfamily hydrolase subfamily IIIA. | Putative uncharacterized protein. | 0.406 |
CRD_01470 | CRD_01469 | CRD_01470 | CRD_01469 | HAD-superfamily hydrolase subfamily IIIA. | Small GTP-binding protein domain protein. | 0.507 |
CRD_01470 | CRD_01471 | CRD_01470 | CRD_01471 | HAD-superfamily hydrolase subfamily IIIA. | Protein of unknown function DUF1292. | 0.567 |
CRD_01470 | CRD_01472 | CRD_01470 | CRD_01472 | HAD-superfamily hydrolase subfamily IIIA. | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.412 |
CRD_01470 | CRD_01932 | CRD_01470 | CRD_01932 | HAD-superfamily hydrolase subfamily IIIA. | DNA polymerase III, delta subunit. | 0.424 |
CRD_01470 | CRD_02323 | CRD_01470 | CRD_02323 | HAD-superfamily hydrolase subfamily IIIA. | GTP-binding protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 0.426 |
CRD_01470 | CRD_02925 | CRD_01470 | CRD_02925 | HAD-superfamily hydrolase subfamily IIIA. | conR (Cell envelope-related transcriptional attenuator). | 0.407 |
CRD_01470 | aroE | CRD_01470 | CRD_00823 | HAD-superfamily hydrolase subfamily IIIA. | aroK (Quinate/Shikimate 5-dehydrogenase); Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.428 |
CRD_01470 | mrnC | CRD_01470 | CRD_00515 | HAD-superfamily hydrolase subfamily IIIA. | Ribonuclease III; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.419 |
CRD_01471 | CRD_01470 | CRD_01471 | CRD_01470 | Protein of unknown function DUF1292. | HAD-superfamily hydrolase subfamily IIIA. | 0.567 |
CRD_01471 | CRD_01472 | CRD_01471 | CRD_01472 | Protein of unknown function DUF1292. | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.537 |
CRD_01472 | CRD_01470 | CRD_01472 | CRD_01470 | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | HAD-superfamily hydrolase subfamily IIIA. | 0.412 |
CRD_01472 | CRD_01471 | CRD_01472 | CRD_01471 | Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Protein of unknown function DUF1292. | 0.537 |
CRD_01932 | CRD_01470 | CRD_01932 | CRD_01470 | DNA polymerase III, delta subunit. | HAD-superfamily hydrolase subfamily IIIA. | 0.424 |
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