Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CRD_02090LmbE-like protein. (260 aa)    
Predicted Functional Partners:
CRD_02091
Glycosyl transferase, group 1.
 
 
  0.745
CRD_00750
Amidohydrolase 2.
  
  
  0.568
CRD_02302
NADPH:quinone reductase and related Zn-dependent oxidoreductases.
  
  
  0.532
CRD_02250
Conserved hypothetical protein.
  
  
 0.526
CRD_01453
Hypothetical protein.
    
 0.511
CRD_02307
Non-ribosomal peptide synthase.
  
  
 0.479
CRD_01906
N-acetylglucosamine-6-phosphate deacetylase.
     
 0.454
CRD_02089
Conserved hypothetical protein.
       0.443
CRD_01046
PolyA polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
  
 0.412
glmS
Glucosamine-fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
    
  0.405
Your Current Organism:
Raphidiopsis brookii
NCBI taxonomy Id: 533247
Other names: R. brookii D9, Raphidiopsis brookii D9, Raphidiopsis sp. D9
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