Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CRD_00466 | CRD_00703 | CRD_00466 | CRD_00703 | Ribonuclease E and G. | Superfamily II DNA/RNA helicases, SNF2 family. | 0.863 |
CRD_00466 | CRD_00704 | CRD_00466 | CRD_00704 | Ribonuclease E and G. | Hypothetical protein. | 0.863 |
CRD_00466 | CRD_02216 | CRD_00466 | CRD_02216 | Ribonuclease E and G. | Polyribonucleotide nucleotidyltransferase. | 0.945 |
CRD_00466 | CRD_02217 | CRD_00466 | CRD_02217 | Ribonuclease E and G. | Polyribonucleotide nucleotidyltransferase. | 0.945 |
CRD_00703 | CRD_00466 | CRD_00703 | CRD_00466 | Superfamily II DNA/RNA helicases, SNF2 family. | Ribonuclease E and G. | 0.863 |
CRD_00703 | CRD_00704 | CRD_00703 | CRD_00704 | Superfamily II DNA/RNA helicases, SNF2 family. | Hypothetical protein. | 0.999 |
CRD_00703 | CRD_02216 | CRD_00703 | CRD_02216 | Superfamily II DNA/RNA helicases, SNF2 family. | Polyribonucleotide nucleotidyltransferase. | 0.880 |
CRD_00703 | CRD_02217 | CRD_00703 | CRD_02217 | Superfamily II DNA/RNA helicases, SNF2 family. | Polyribonucleotide nucleotidyltransferase. | 0.880 |
CRD_00703 | fusA | CRD_00703 | CRD_00963 | Superfamily II DNA/RNA helicases, SNF2 family. | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] | 0.988 |
CRD_00703 | infB | CRD_00703 | CRD_02998 | Superfamily II DNA/RNA helicases, SNF2 family. | Initiation factor 2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.531 |
CRD_00703 | rplA | CRD_00703 | CRD_01011 | Superfamily II DNA/RNA helicases, SNF2 family. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.774 |
CRD_00703 | rplB | CRD_00703 | CRD_02890 | Superfamily II DNA/RNA helicases, SNF2 family. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.697 |
CRD_00704 | CRD_00466 | CRD_00704 | CRD_00466 | Hypothetical protein. | Ribonuclease E and G. | 0.863 |
CRD_00704 | CRD_00703 | CRD_00704 | CRD_00703 | Hypothetical protein. | Superfamily II DNA/RNA helicases, SNF2 family. | 0.999 |
CRD_00704 | CRD_02216 | CRD_00704 | CRD_02216 | Hypothetical protein. | Polyribonucleotide nucleotidyltransferase. | 0.880 |
CRD_00704 | CRD_02217 | CRD_00704 | CRD_02217 | Hypothetical protein. | Polyribonucleotide nucleotidyltransferase. | 0.880 |
CRD_00704 | fusA | CRD_00704 | CRD_00963 | Hypothetical protein. | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] | 0.988 |
CRD_00704 | infB | CRD_00704 | CRD_02998 | Hypothetical protein. | Initiation factor 2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.531 |
CRD_00704 | rplA | CRD_00704 | CRD_01011 | Hypothetical protein. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.774 |
CRD_00704 | rplB | CRD_00704 | CRD_02890 | Hypothetical protein. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.697 |
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