STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRD_02237Hypothetical protein. (295 aa)    
Predicted Functional Partners:
CRD_00703
Superfamily II DNA/RNA helicases, SNF2 family.
    
 0.900
CRD_00704
Hypothetical protein.
    
 0.900
CRD_00488
Beta-lactamase-like protein.
    
 0.885
alaS
Alanyl-tRNA synthetase, class IIc; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.885
CRD_01305
Histone deacetylase superfamily.
    
  0.836
gpmI
Phosphoglycerate mutase, 2,3- bisphosphoglycerate-independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
    
  0.822
CRD_00035
Peptidase S1 and S6, chymotrypsin/Hap.
    
  0.806
CRD_00245
Hypothetical protein.
    
  0.806
CRD_01036
Hypothetical protein.
    
  0.806
CRD_01501
Peptidase S1 and S6, chymotrypsin/Hap.
    
  0.806
Your Current Organism:
Raphidiopsis brookii
NCBI taxonomy Id: 533247
Other names: R. brookii D9, Raphidiopsis brookii D9, Raphidiopsis sp. D9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.