STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRD_02849Peptidase M50, putative membrane-associated zinc metallopeptidase. (364 aa)    
Predicted Functional Partners:
nth
Endonuclease III/Nth; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
     
 0.628
CRD_01189
Di-trans-poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
    0.599
CRD_01482
Peptidase S26A, signal peptidase I; Belongs to the peptidase S26 family.
 
    0.583
CRD_02580
Surface antigen variable number.
 
  
 0.575
CRD_00303
Peptidase S41A; Belongs to the peptidase S41A family.
  
  
 0.569
CRD_02581
Hypothetical protein.
 
  
 0.569
CRD_02850
Peptidase T2, asparaginase 2.
       0.568
CRD_02310
Peptidase S26A, signal peptidase I; Belongs to the peptidase S26 family.
 
    0.529
CRD_00957
Glutamine amidotransferase, class-II.
  
  
 0.518
CRD_00545
Peptidase S41A; Belongs to the peptidase S41A family.
  
  
 0.510
Your Current Organism:
Raphidiopsis brookii
NCBI taxonomy Id: 533247
Other names: R. brookii D9, Raphidiopsis brookii D9, Raphidiopsis sp. D9
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