STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRD_02981Amine oxidase. (482 aa)    
Predicted Functional Partners:
CRD_02982
Squalene/phytoene synthase.
  
 0.972
CRD_01592
Photosystem II manganese-stabilizing protein PsbO.
  
     0.769
CRD_02378
NnrU.
  
     0.768
CRD_03034
Protein of unknown function DUF1350.
  
     0.768
CRD_03049
Conserved hypothetical protein.
  
     0.762
psbZ
Photosystem II 11 kD protein; Plays a role in the repair and/or biogenesis of the calcium- manganese-oxide cluster on the lumenal face of the thylakoid membrane. Its presence in a photosystem II (PSII) preparation prevents binding of some small extrinsic subunits and thus assembly of calcium-manganese- oxide cluster.
  
     0.755
psbW
Photosystem II protein PsbW, class I; Belongs to the Psb28 family.
  
     0.749
CRD_02057
Glycosyl hydrolase, BNR repeat protein; Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity.
  
     0.729
CRD_03038
Conserved hypothetical protein.
  
     0.729
CRD_00929
Conserved hypothetical protein.
  
     0.696
Your Current Organism:
Raphidiopsis brookii
NCBI taxonomy Id: 533247
Other names: R. brookii D9, Raphidiopsis brookii D9, Raphidiopsis sp. D9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.