STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRD_03040HAD-superfamily hydrolase, subfamily IA, variant 1. (211 aa)    
Predicted Functional Partners:
queG
4Fe-4S cluster binding protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family.
    
 0.926
CRD_02976
Competence-damaged protein; Belongs to the CinA family.
    
  0.690
CRD_00015
HAD-superfamily hydrolase, subfamily IA, variant 1.
  
  
0.642
CRD_01983
Haloacid dehalogenase-like protein hydrolase.
  
  
 0.632
CRD_01046
PolyA polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
    
  0.585
CRD_01080
Hypothetical protein.
    
 0.563
CRD_03042
Hypothetical protein.
       0.552
CRD_03039
Papain family cysteine protease.
       0.511
rbcL
Ribulose bisphosphate carboxylase, large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.
     
 0.499
CRD_00874
FAD linked oxidase-like protein.
    
 0.493
Your Current Organism:
Raphidiopsis brookii
NCBI taxonomy Id: 533247
Other names: R. brookii D9, Raphidiopsis brookii D9, Raphidiopsis sp. D9
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