STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Y032_0037g3436RRM domain-containing protein. (78 aa)    
Predicted Functional Partners:
Y032_0070g446
Uncharacterized protein.
   
 0.980
Y032_0361g3463
PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...]
    
 0.949
Y032_0843g2643
USP domain-containing protein.
    
 0.944
Y032_0057g2734
Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.
   
 0.937
Y032_0298g1749
MIF4G domain-containing protein.
   
 0.935
Y032_0128g1452
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure.
   
 0.902
Y032_0314g2232
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.897
Y032_0103g3516
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.897
Y032_0031g2408
Uncharacterized protein.
   
 0.897
Y032_0025g1180
LsmAD domain-containing protein.
   
 
 0.894
Your Current Organism:
Ancylostoma ceylanicum
NCBI taxonomy Id: 53326
Other names: A. ceylanicum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.