STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN37800.1Pyrimidine oxygenase. (351 aa)    
Predicted Functional Partners:
SFN84117.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
   
 0.894
SFN56516.1
Amino acid adenylation domain-containing protein.
   
 0.865
SFN70880.1
Amino acid adenylation domain-containing protein.
  
 0.807
SFN47926.1
4-hydroxyphenylacetate 3-monooxygenase reductase component.
 
 
 0.748
SFN37811.1
Cyanate permease.
 
    0.710
arnA
UDP-glucuronic acid oxidase, UDP-4-keto-hexauronic acid decarboxylating; Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the N-terminal section; belongs to the Fmt family. UDP- L-Ara4N formyltransferase subfamily.
     
 0.704
SFN97342.1
NADPH-dependent FMN reductase.
  
 0.645
SFN71145.1
Thioesterase domain-containing protein.
 
 
 0.637
SFN71625.1
Taurine dioxygenase.
 
 
  0.620
SFN47742.1
Amino acid adenylation domain-containing protein.
 
 
 0.604
Your Current Organism:
Xenorhabdus japonica
NCBI taxonomy Id: 53341
Other names: DSM 16522, IAM 14265, JCM 21111, X. japonica, Xenorhabdus japonicus
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