STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN71773.1P pilus assembly protein, chaperone PapD. (228 aa)    
Predicted Functional Partners:
SFN71803.1
Pilin (type 1 fimbria component protein).
 
   0.953
SFN71754.1
Major type 1 subunit fimbrin (pilin).
 
   0.951
SFN71788.1
Outer membrane usher protein.
 
   0.943
SFN87647.1
Major type 1 subunit fimbrin (pilin).
 
   0.919
SFN62092.1
Pilin (type 1 fimbria component protein).
 
   0.918
SFN62038.1
Major type 1 subunit fimbrin (pilin).
 
   0.913
SFN87708.1
Pilin (type 1 fimbria component protein).
  
   0.905
SFN39561.1
Pilin (type 1 fimbria component protein).
  
   0.893
SFN62071.1
Outer membrane usher protein.
  
   0.885
SFN87688.1
Outer membrane usher protein.
  
   0.885
Your Current Organism:
Xenorhabdus japonica
NCBI taxonomy Id: 53341
Other names: DSM 16522, IAM 14265, JCM 21111, X. japonica, Xenorhabdus japonicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.