STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN84598.1ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA. (318 aa)    
Predicted Functional Partners:
SFN84637.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.
 0.999
SFN84612.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.
 
 0.998
SFN84675.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
 
 0.990
SFN84655.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.
 
 
 0.983
SFN84579.1
oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.
 
  
 0.958
SFN84752.1
acyl-CoA thioesterase.
 
 
 0.943
SFN84712.1
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase.
 
 
 0.934
SFN75409.1
Carbapenem biosynthesis protein CpmE.
 
 0.903
SFN84781.1
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 0.852
SFN84808.1
Transcriptional regulator, PaaX family.
 
  
 0.824
Your Current Organism:
Xenorhabdus japonica
NCBI taxonomy Id: 53341
Other names: DSM 16522, IAM 14265, JCM 21111, X. japonica, Xenorhabdus japonicus
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