STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN99859.1Hypothetical protein. (206 aa)    
Predicted Functional Partners:
SFN99871.1
Paraquat-inducible protein B.
 
   
 0.949
SFN99894.1
Paraquat-inducible protein A.
 
  
 0.944
rlmL
23S rRNA m(2)G-2445 methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family.
       0.690
SFN97674.1
Protein of unknown function.
  
     0.655
SFN99905.1
ATP-binding cassette, subfamily F, uup.
       0.623
SFN53318.1
Putative membrane protein.
  
     0.570
SFO00568.1
Protein of unknown function.
  
     0.560
matP
Hypothetical protein; Required for spatial organization of the terminus region of the chromosome (Ter macrodomain) during the cell cycle. Prevents early segregation of duplicated Ter macrodomains during cell division. Binds specifically to matS, which is a 13 bp signature motif repeated within the Ter macrodomain.
  
     0.517
SFN41508.1
Uncharacterised protein family (UPF0370).
  
     0.504
SFN44629.1
SH3 domain protein.
  
     0.489
Your Current Organism:
Xenorhabdus japonica
NCBI taxonomy Id: 53341
Other names: DSM 16522, IAM 14265, JCM 21111, X. japonica, Xenorhabdus japonicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.