Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFN34295.1 | aroC | SAMN05421579_10171 | SAMN05421579_1474 | Indolepyruvate ferredoxin oxidoreductase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.881 |
SFN34295.1 | trpC | SAMN05421579_10171 | SAMN05421579_10839 | Indolepyruvate ferredoxin oxidoreductase. | Indole-3-glycerol phosphate synthase; Belongs to the TrpC family. | 0.458 |
SFN34295.1 | trpD | SAMN05421579_10171 | SAMN05421579_10840 | Indolepyruvate ferredoxin oxidoreductase. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.504 |
SFO01167.1 | SFO08111.1 | SAMN05421579_14414 | SAMN05421579_1587 | Phenazine biosynthesis protein phzE. | Chorismate mutase. | 0.844 |
SFO01167.1 | aroA | SAMN05421579_14414 | SAMN05421579_11149 | Phenazine biosynthesis protein phzE. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.574 |
SFO01167.1 | aroB | SAMN05421579_14414 | SAMN05421579_11912 | Phenazine biosynthesis protein phzE. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.610 |
SFO01167.1 | aroC | SAMN05421579_14414 | SAMN05421579_1474 | Phenazine biosynthesis protein phzE. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.893 |
SFO01167.1 | aroE | SAMN05421579_14414 | SAMN05421579_14542 | Phenazine biosynthesis protein phzE. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.908 |
SFO01167.1 | aroK | SAMN05421579_14414 | SAMN05421579_11020 | Phenazine biosynthesis protein phzE. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.709 |
SFO01167.1 | aroK-2 | SAMN05421579_14414 | SAMN05421579_11913 | Phenazine biosynthesis protein phzE. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.709 |
SFO01167.1 | trpC | SAMN05421579_14414 | SAMN05421579_10839 | Phenazine biosynthesis protein phzE. | Indole-3-glycerol phosphate synthase; Belongs to the TrpC family. | 0.999 |
SFO01167.1 | trpD | SAMN05421579_14414 | SAMN05421579_10840 | Phenazine biosynthesis protein phzE. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.999 |
SFO08111.1 | SFO01167.1 | SAMN05421579_1587 | SAMN05421579_14414 | Chorismate mutase. | Phenazine biosynthesis protein phzE. | 0.844 |
SFO08111.1 | aroA | SAMN05421579_1587 | SAMN05421579_11149 | Chorismate mutase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.971 |
SFO08111.1 | aroB | SAMN05421579_1587 | SAMN05421579_11912 | Chorismate mutase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.887 |
SFO08111.1 | aroC | SAMN05421579_1587 | SAMN05421579_1474 | Chorismate mutase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.947 |
SFO08111.1 | aroE | SAMN05421579_1587 | SAMN05421579_14542 | Chorismate mutase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.886 |
SFO08111.1 | aroK | SAMN05421579_1587 | SAMN05421579_11020 | Chorismate mutase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.873 |
SFO08111.1 | aroK-2 | SAMN05421579_1587 | SAMN05421579_11913 | Chorismate mutase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.888 |
SFO08111.1 | trpC | SAMN05421579_1587 | SAMN05421579_10839 | Chorismate mutase. | Indole-3-glycerol phosphate synthase; Belongs to the TrpC family. | 0.910 |
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