STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIU_02585Cell wall associated biofilm protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (2074 aa)    
Predicted Functional Partners:
LIU_08855
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.593
LIU_03265
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.573
dltC
Cytochrome C552; Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC- carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall.
  
 
 0.571
LIU_03130
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.541
LIU_08860
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.536
LIU_02580
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.511
LIU_03960
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.485
LIU_03965
Peptidase M13; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.484
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.479
acpA
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
   
 
 0.479
Your Current Organism:
Enterococcus durans
NCBI taxonomy Id: 53345
Other names: ATCC 19432, CCUG 7972, CIP 55.125, DSM 20633, E. durans, Enterococcus sp. VJI19, JCM 8725, LMG 10746, LMG:10746, NBRC 100479, NCDO 596, NCIMB 700596, NCTC 8307, Streptococcus durans, strain 98D
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