Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LIU_02585Cell wall associated biofilm protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (2074 aa)    
Predicted Functional Partners:
LIU_03265
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.567
LIU_02580
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.511
LIU_08855
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.509
LIU_03965
Peptidase M13; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.501
LIU_08275
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.475
LIU_13180
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.461
celB
PTS cellobiose transporter subunit IIB; Required for cellobiose uptake and metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.457
LIU_04420
M protein trans-acting positive regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.451
LIU_08860
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.440
LIU_03130
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.417
Your Current Organism:
Enterococcus durans
NCBI taxonomy Id: 53345
Other names: ATCC 19432, CCUG 7972, CIP 55.125, DSM 20633, E. durans, Enterococcus sp. VJI19, JCM 8725, LMG 10746, LMG:10746, NBRC 100479, NCDO 596, NCIMB 700596, NCTC 8307, Streptococcus durans, strain 98D
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