Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LIU_03410Alpha-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (719 aa)    
Predicted Functional Partners:
LIU_03415
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.943
LIU_03425
Alpha-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.868
LIU_02640
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.823
LIU_02645
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.773
LIU_12065
Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.642
recF
Recombinase RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
      
 0.626
LIU_02670
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.596
LIU_11670
Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.583
LIU_11015
N-acetylmannosamine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.547
ycjP_1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.498
Your Current Organism:
Enterococcus durans
NCBI taxonomy Id: 53345
Other names: ATCC 19432, CCUG 7972, CIP 55.125, DSM 20633, E. durans, Enterococcus sp. VJI19, JCM 8725, LMG 10746, LMG:10746, NBRC 100479, NCDO 596, NCIMB 700596, NCTC 8307, Streptococcus durans, strain 98D
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