Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LIU_04420M protein trans-acting positive regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (506 aa)    
Predicted Functional Partners:
LIU_06300
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.674
LIU_09510
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.607
LIU_08190
acetate--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.582
frmR_1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.498
LIU_04855
Endoglycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.495
LIU_06235
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.489
LIU_13215
Amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.465
LIU_02585
Cell wall associated biofilm protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.451
LIU_08980
GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.447
LIU_07520
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.442
Your Current Organism:
Enterococcus durans
NCBI taxonomy Id: 53345
Other names: ATCC 19432, CCUG 7972, CIP 55.125, DSM 20633, E. durans, Enterococcus sp. VJI19, JCM 8725, LMG 10746, LMG:10746, NBRC 100479, NCDO 596, NCIMB 700596, NCTC 8307, Streptococcus durans, strain 98D
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