STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ychMSulfate permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (539 aa)    
Predicted Functional Partners:
LIU_07560
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.689
LIU_08505
Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.689
LIU_03520
Metallophosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.586
sbcD
Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
   0.586
LIU_05060
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.492
gno_2
Gluconate 5-dehydrogenase; Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.477
LIU_00700
3-ketoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.477
LIU_02700
Gluconate 5-dehydrogenase; Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.477
LIU_08625
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.477
LIU_09725
Sugar dehydrogenase; Converts glucose to D-glucono-1,5 lactone; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.477
Your Current Organism:
Enterococcus durans
NCBI taxonomy Id: 53345
Other names: ATCC 19432, CCUG 7972, CIP 55.125, DSM 20633, E. durans, Enterococcus sp. VJI19, JCM 8725, LMG 10746, LMG:10746, NBRC 100479, NCDO 596, NCIMB 700596, NCTC 8307, Streptococcus durans, strain 98D
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.