Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LIU_08950Toxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)    
Predicted Functional Partners:
LIU_08945
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.888
LIU_08120
Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.560
LIU_08940
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.533
LIU_02525
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.525
LIU_05040
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.524
LIU_13230
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.520
LIU_03490
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.494
LIU_08955
Phage immunity protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.480
LIU_13235
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.473
LIU_03900
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.446
Your Current Organism:
Enterococcus durans
NCBI taxonomy Id: 53345
Other names: ATCC 19432, CCUG 7972, CIP 55.125, DSM 20633, E. durans, Enterococcus sp. VJI19, JCM 8725, LMG 10746, LMG:10746, NBRC 100479, NCDO 596, NCIMB 700596, NCTC 8307, Streptococcus durans, strain 98D
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