Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LIU_09175Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa)    
Predicted Functional Partners:
gpmA-3
Phosphoglyceromutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
       0.762
LIU_09180
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.684
LIU_09165
Phosphoglycolate phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.647
LIU_09285
Small protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.561
LIU_09365
RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.561
LIU_09160
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.548
LIU_02985
ACT domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.498
LIU_09195
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.482
LIU_09190
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.480
LIU_09185
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.477
Your Current Organism:
Enterococcus durans
NCBI taxonomy Id: 53345
Other names: ATCC 19432, CCUG 7972, CIP 55.125, DSM 20633, E. durans, Enterococcus sp. VJI19, JCM 8725, LMG 10746, LMG:10746, NBRC 100479, NCDO 596, NCIMB 700596, NCTC 8307, Streptococcus durans, strain 98D
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