Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LIU_11440Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)    
Predicted Functional Partners:
LIU_10735
FMN reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flavin oxidoreductase frp family.
  
  
 0.484
LIU_02685
Family 2 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.464
LIU_12610
CAAX protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.454
yadH
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.444
LIU_06095
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.444
LIU_11750
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.444
LIU_11465
Abortive phage resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.416
Your Current Organism:
Enterococcus durans
NCBI taxonomy Id: 53345
Other names: ATCC 19432, CCUG 7972, CIP 55.125, DSM 20633, E. durans, Enterococcus sp. VJI19, JCM 8725, LMG 10746, LMG:10746, NBRC 100479, NCDO 596, NCIMB 700596, NCTC 8307, Streptococcus durans, strain 98D
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