Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DsbG | NifJ | A5802_001266 | A5802_001265 | Hypothetical protein. | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | 0.790 |
DsbG | dacA | A5802_001266 | A5802_001264 | Hypothetical protein. | Hypothetical protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. | 0.585 |
NifJ | DsbG | A5802_001265 | A5802_001266 | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | Hypothetical protein. | 0.790 |
NifJ | OTP27528.1 | A5802_001265 | A5802_001263 | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | Hypothetical protein. | 0.800 |
NifJ | OTP28201.1 | A5802_001265 | A5802_001940 | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | Hypothetical protein. | 0.590 |
NifJ | Pgm2 | A5802_001265 | A5802_001637 | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | Phosphoglucomutase/phosphomannomutase. | 0.590 |
NifJ | dacA | A5802_001265 | A5802_001264 | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | Hypothetical protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. | 0.828 |
NifJ | glmM | A5802_001265 | A5802_001262 | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family. | 0.755 |
OTP27528.1 | NifJ | A5802_001263 | A5802_001265 | Hypothetical protein. | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | 0.800 |
OTP27528.1 | dacA | A5802_001263 | A5802_001264 | Hypothetical protein. | Hypothetical protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. | 0.967 |
OTP27528.1 | glmM | A5802_001263 | A5802_001262 | Hypothetical protein. | Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family. | 0.906 |
OTP28201.1 | NifJ | A5802_001940 | A5802_001265 | Hypothetical protein. | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | 0.590 |
OTP28201.1 | dacA | A5802_001940 | A5802_001264 | Hypothetical protein. | Hypothetical protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. | 0.540 |
Pgm2 | NifJ | A5802_001637 | A5802_001265 | Phosphoglucomutase/phosphomannomutase. | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | 0.590 |
Pgm2 | dacA | A5802_001637 | A5802_001264 | Phosphoglucomutase/phosphomannomutase. | Hypothetical protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. | 0.540 |
argR | dacA | A5802_000133 | A5802_001264 | Arginine repressor; Regulates arginine biosynthesis genes. | Hypothetical protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. | 0.485 |
argR-2 | dacA | A5802_000357 | A5802_001264 | Arginine repressor; Regulates arginine biosynthesis genes. | Hypothetical protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. | 0.485 |
dacA | DsbG | A5802_001264 | A5802_001266 | Hypothetical protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. | Hypothetical protein. | 0.585 |
dacA | NifJ | A5802_001264 | A5802_001265 | Hypothetical protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | 0.828 |
dacA | OTP27528.1 | A5802_001264 | A5802_001263 | Hypothetical protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. | Hypothetical protein. | 0.967 |
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