Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OTP28404.1Transcriptional regulatory protein YycF. (234 aa)    
Predicted Functional Partners:
walK
PAS domain two-component system sensor histidine kinase.
 0.999
OTP28400.1
Metallo-beta-lactamase YycJ.
  
  
 0.908
OTP28401.1
YycH like protein.
  
  
 0.887
OTP28402.1
Hypothetical protein.
  
  
 0.886
OTP27855.1
Two-component system sensor histidine kinase.
 
 
 0.864
OTP27285.1
Two-component system sensor histidine kinase.
 
 
 0.842
OTP25595.1
Two-component system sensor histidine kinase.
 
 0.838
OTP26410.1
Hypothetical protein.
 
 
 0.832
OTP22175.1
Hypothetical protein.
 
 
 0.823
OTP20041.1
Hypothetical protein.
 
 
 0.823
Your Current Organism:
Enterococcus mundtii
NCBI taxonomy Id: 53346
Other names: ATCC 43186, CCUG 18656, CFBP 4251, CIP 103010, DSM 4838, E. mundtii, Enterobacter sp. PX-E.sp.Jor, JCM 8731, LMG 10748, LMG:10748, MUTK 559, NBRC 100490, NCDO 2375, NCIMB 702375, NCTC 12363
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