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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB39447.1HlyD family secretion protein. (529 aa)    
Predicted Functional Partners:
SEB39415.1
Putative ABC transport system permease protein.
 
  
 0.997
SEB39432.1
Putative ABC transport system ATP-binding protein.
 
 
 0.996
SEB62188.1
ATP-binding cassette, subfamily B, IrtB.
  
 0.942
SEB45147.1
Putative ABC transport system ATP-binding protein.
  
 
 0.934
SEB48431.1
Protein of unknown function.
   
    0.925
SEB45131.1
Putative ABC transport system permease protein.
   
    0.883
SEB39337.1
Hypothetical protein.
   
    0.804
SEB39402.1
DNA polymerase III, alpha subunit.
       0.761
clpB
ATP-dependent Clp protease ATP-binding subunit ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.
   
  
 0.755
SEB39475.1
23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.750
Your Current Organism:
Corynebacterium coyleae
NCBI taxonomy Id: 53374
Other names: ATCC 700219, C. coyleae, CCUG 38194, CIP 104919, Corynebacterium coyleiae, DMMZ 214, DSM 44184, JCM 10381
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