SEB59556.1 protein (Corynebacterium coyleae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SEB59556.1

Long-chain acyl-CoA synthetase. (573 aa)

Predicted Functional Partners:

SEB59582.1

0.969

SEB50151.1

0.966

SEB68623.1

0.960

SEB42643.1

0.924

SEB69621.1

0.825

SEB68559.1

0.811

SEB80314.1

0.811

SEB50129.1

0.647

SEB68657.1

0.647

SEB69867.1

0.647

Your Current Organism:

Corynebacterium coyleae

NCBI taxonomy Id: 53374
Other names: ATCC 700219, C. coyleae, CCUG 38194, CIP 104919, Corynebacterium coyleiae, DMMZ 214, DSM 44184, JCM 10381

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEB42643.1	SEB50129.1	SAMN04488531_0406	SAMN04488531_0811	Long-chain acyl-CoA synthetase.	Acetyl-CoA carboxylase, carboxyltransferase component.	0.602
SEB42643.1	SEB50151.1	SAMN04488531_0406	SAMN04488531_0812	Long-chain acyl-CoA synthetase.	Mycolic acid condensase.	0.517
SEB42643.1	SEB59556.1	SAMN04488531_0406	SAMN04488531_1237	Long-chain acyl-CoA synthetase.	Long-chain acyl-CoA synthetase.	0.924
SEB42643.1	SEB59582.1	SAMN04488531_0406	SAMN04488531_1238	Long-chain acyl-CoA synthetase.	Long-chain acyl-CoA synthetase.	0.925
SEB42643.1	SEB68559.1	SAMN04488531_0406	SAMN04488531_1533	Long-chain acyl-CoA synthetase.	acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein.	0.800
SEB42643.1	SEB68623.1	SAMN04488531_0406	SAMN04488531_1535	Long-chain acyl-CoA synthetase.	Fatty acid synthase, bacterial type.	0.981
SEB42643.1	SEB68657.1	SAMN04488531_0406	SAMN04488531_1536	Long-chain acyl-CoA synthetase.	propionyl-CoA carboxylase beta chain.	0.602
SEB42643.1	SEB69621.1	SAMN04488531_0406	SAMN04488531_1564	Long-chain acyl-CoA synthetase.	Biotin carboxyl carrier protein /biotin carboxylase.	0.800
SEB42643.1	SEB69867.1	SAMN04488531_0406	SAMN04488531_1571	Long-chain acyl-CoA synthetase.	propionyl-CoA carboxylase beta chain.	0.602
SEB42643.1	SEB80314.1	SAMN04488531_0406	SAMN04488531_1860	Long-chain acyl-CoA synthetase.	acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein.	0.800
SEB50129.1	SEB42643.1	SAMN04488531_0811	SAMN04488531_0406	Acetyl-CoA carboxylase, carboxyltransferase component.	Long-chain acyl-CoA synthetase.	0.602
SEB50129.1	SEB50151.1	SAMN04488531_0811	SAMN04488531_0812	Acetyl-CoA carboxylase, carboxyltransferase component.	Mycolic acid condensase.	0.994
SEB50129.1	SEB59556.1	SAMN04488531_0811	SAMN04488531_1237	Acetyl-CoA carboxylase, carboxyltransferase component.	Long-chain acyl-CoA synthetase.	0.647
SEB50129.1	SEB59582.1	SAMN04488531_0811	SAMN04488531_1238	Acetyl-CoA carboxylase, carboxyltransferase component.	Long-chain acyl-CoA synthetase.	0.647
SEB50129.1	SEB68559.1	SAMN04488531_0811	SAMN04488531_1533	Acetyl-CoA carboxylase, carboxyltransferase component.	acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein.	0.982
SEB50129.1	SEB68623.1	SAMN04488531_0811	SAMN04488531_1535	Acetyl-CoA carboxylase, carboxyltransferase component.	Fatty acid synthase, bacterial type.	0.987
SEB50129.1	SEB68657.1	SAMN04488531_0811	SAMN04488531_1536	Acetyl-CoA carboxylase, carboxyltransferase component.	propionyl-CoA carboxylase beta chain.	0.905
SEB50129.1	SEB69621.1	SAMN04488531_0811	SAMN04488531_1564	Acetyl-CoA carboxylase, carboxyltransferase component.	Biotin carboxyl carrier protein /biotin carboxylase.	0.987
SEB50129.1	SEB69867.1	SAMN04488531_0811	SAMN04488531_1571	Acetyl-CoA carboxylase, carboxyltransferase component.	propionyl-CoA carboxylase beta chain.	0.910
SEB50129.1	SEB80314.1	SAMN04488531_0811	SAMN04488531_1860	Acetyl-CoA carboxylase, carboxyltransferase component.	acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein.	0.984