STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB59556.1Long-chain acyl-CoA synthetase. (573 aa)    
Predicted Functional Partners:
SEB50151.1
Mycolic acid condensase.
 
 0.969
SEB68623.1
Fatty acid synthase, bacterial type.
  
 
 0.949
SEB51060.1
glutaryl-CoA dehydrogenase.
  
 
 0.761
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.751
SEB40999.1
Acyl carrier protein.
   
  0.715
SEB59582.1
Long-chain acyl-CoA synthetase.
 
    
0.710
SEB42643.1
Long-chain acyl-CoA synthetase.
 
 
 
0.707
rplC
LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
   
   0.676
rplO
LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
   0.673
rplM
LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
    
   0.673
Your Current Organism:
Corynebacterium coyleae
NCBI taxonomy Id: 53374
Other names: ATCC 700219, C. coyleae, CCUG 38194, CIP 104919, Corynebacterium coyleiae, DMMZ 214, DSM 44184, JCM 10381
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.