Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEB37901.1 | SEB65113.1 | SAMN04488531_0084 | SAMN04488531_1431 | TIGR03085 family protein. | FdhD protein. | 0.582 |
SEB37901.1 | SEB73169.1 | SAMN04488531_0084 | SAMN04488531_1672 | TIGR03085 family protein. | Molybdopterin or thiamine biosynthesis adenylyltransferase. | 0.712 |
SEB37901.1 | SEB79521.1 | SAMN04488531_0084 | SAMN04488531_1838 | TIGR03085 family protein. | Molybdopterin molybdotransferase; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family. | 0.522 |
SEB65113.1 | SEB37901.1 | SAMN04488531_1431 | SAMN04488531_0084 | FdhD protein. | TIGR03085 family protein. | 0.582 |
SEB65113.1 | SEB65145.1 | SAMN04488531_1431 | SAMN04488531_1432 | FdhD protein. | Protein of unknown function. | 0.642 |
SEB65113.1 | SEB73169.1 | SAMN04488531_1431 | SAMN04488531_1672 | FdhD protein. | Molybdopterin or thiamine biosynthesis adenylyltransferase. | 0.612 |
SEB65113.1 | SEB79521.1 | SAMN04488531_1431 | SAMN04488531_1838 | FdhD protein. | Molybdopterin molybdotransferase; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family. | 0.545 |
SEB65113.1 | SEB90015.1 | SAMN04488531_1431 | SAMN04488531_2116 | FdhD protein. | Cysteine desulfurase. | 0.613 |
SEB65113.1 | rplF | SAMN04488531_1431 | SAMN04488531_1434 | FdhD protein. | LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.490 |
SEB65113.1 | rplR | SAMN04488531_1431 | SAMN04488531_1435 | FdhD protein. | Large subunit ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.490 |
SEB65113.1 | rpmD | SAMN04488531_1431 | SAMN04488531_1437 | FdhD protein. | Large subunit ribosomal protein L30. | 0.469 |
SEB65113.1 | rpsE | SAMN04488531_1431 | SAMN04488531_1436 | FdhD protein. | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.469 |
SEB65113.1 | rpsH | SAMN04488531_1431 | SAMN04488531_1433 | FdhD protein. | SSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.500 |
SEB65145.1 | SEB65113.1 | SAMN04488531_1432 | SAMN04488531_1431 | Protein of unknown function. | FdhD protein. | 0.642 |
SEB65145.1 | rplF | SAMN04488531_1432 | SAMN04488531_1434 | Protein of unknown function. | LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.406 |
SEB65145.1 | rplR | SAMN04488531_1432 | SAMN04488531_1435 | Protein of unknown function. | Large subunit ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.406 |
SEB65145.1 | rpsH | SAMN04488531_1432 | SAMN04488531_1433 | Protein of unknown function. | SSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.432 |
SEB73169.1 | SEB37901.1 | SAMN04488531_1672 | SAMN04488531_0084 | Molybdopterin or thiamine biosynthesis adenylyltransferase. | TIGR03085 family protein. | 0.712 |
SEB73169.1 | SEB65113.1 | SAMN04488531_1672 | SAMN04488531_1431 | Molybdopterin or thiamine biosynthesis adenylyltransferase. | FdhD protein. | 0.612 |
SEB73169.1 | SEB79521.1 | SAMN04488531_1672 | SAMN04488531_1838 | Molybdopterin or thiamine biosynthesis adenylyltransferase. | Molybdopterin molybdotransferase; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family. | 0.764 |
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