Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ORA76216.1TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)    
Predicted Functional Partners:
ORA76215.1
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.928
ORA76214.1
Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.
 
     0.885
ORA76412.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.864
ORA76211.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.827
ORA76212.1
Xaa-Pro aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.827
ORA76213.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.827
ORA76217.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.756
ORA76210.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.748
ORA75474.1
Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.530
ORA72130.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.521
Your Current Organism:
Mycobacterium heidelbergense
NCBI taxonomy Id: 53376
Other names: ATCC 51253, CIP 105424, DSM 44471, JCM 14842, M. heidelbergense, strain 2554/91
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