Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
vapC-2VapC toxin family PIN domain ribonuclease; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (140 aa)    
Predicted Functional Partners:
ORA76015.1
DUF2191 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.822
ORA71919.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.655
vapC-9
VapC toxin family PIN domain ribonuclease; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.611
ORA75055.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
   
 0.557
ORA76711.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.539
ORA74272.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.539
ORA69697.1
Antitoxin VapB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.539
ORA76016.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.538
vapC-3
VapC toxin family PIN domain ribonuclease; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
  
 0.521
ORA74686.1
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.521
Your Current Organism:
Mycobacterium heidelbergense
NCBI taxonomy Id: 53376
Other names: ATCC 51253, CIP 105424, DSM 44471, JCM 14842, M. heidelbergense, strain 2554/91
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