STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vapC-4VapC toxin family PIN domain ribonuclease; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (139 aa)    
Predicted Functional Partners:
ORA74866.1
Prevent-host-death protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
   
 0.953
ORA76100.1
Prevent-host-death protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
 
 0.618
ORA74285.1
Antitoxin; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
 
 0.618
ORA71132.1
Prevent-host-death family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.618
ORA76711.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.539
ORA74272.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.539
ORA69697.1
Antitoxin VapB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.539
BST25_06970
Plasmid stabilization protein; Incomplete; partial in the middle of a contig; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.533
ORA74205.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.493
ORA75991.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.478
Your Current Organism:
Mycobacterium heidelbergense
NCBI taxonomy Id: 53376
Other names: ATCC 51253, CIP 105424, DSM 44471, JCM 14842, M. heidelbergense, strain 2554/91
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.