STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OJZ72898.1ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (499 aa)    
Predicted Functional Partners:
OJZ71731.1
Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.931
OJZ75736.1
Stage II sporulation protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.815
OJZ67939.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.815
OJZ72991.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.807
OJZ72694.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.729
OJZ76296.1
DUF3093 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.680
OJZ72952.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.673
whiB-3
WhiB family transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
   
 0.664
OJZ73925.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.631
whiB-4
WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.610
Your Current Organism:
Mycobacterium paraffinicum
NCBI taxonomy Id: 53378
Other names: ATCC 12670, DSM 44181, JCM 17782, M. paraffinicum, NCIMB 10420
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