STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB96529.1DNA-binding transcriptional regulator, MarR family. (141 aa)    
Predicted Functional Partners:
SEB96598.1
Putative efflux protein, MATE family.
  
    0.708
SEB96471.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
       0.535
SEB96663.1
Transposase, IS4 family /transposase, IS5 family.
       0.518
SEB96406.1
Threonine/homoserine/homoserine lactone efflux protein.
  
    0.476
SEE19885.1
Predicted branched-chain amino acid permease (azaleucine resistance).
  
     0.417
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.