STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC07547.1Hypothetical protein. (426 aa)    
Predicted Functional Partners:
SEC07480.1
Site-specific recombinase XerD.
  
  
 0.893
SED93114.1
Zona occludens toxin.
  
  
 0.763
SEC07600.1
Zonular occludens toxin (Zot).
  
  
 0.694
SEE09057.1
Zona occludens toxin.
  
  
 0.556
SEE09369.1
Zona occludens toxin.
  
  
 0.556
SEE09732.1
Zona occludens toxin.
  
  
 0.556
SEC07670.1
Protein of unknown function.
       0.523
SEC07734.1
TspB protein.
       0.508
SEC08045.1
Hypothetical protein.
   
  
 0.502
SEC08942.1
Zonular occludens toxin (Zot).
  
  
 0.433
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.