SEC43920.1 protein (Pseudomonas anguilliseptica)

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Score

SEC43920.1

Ribosome-associated protein; Belongs to the UPF0307 family. (172 aa)

Predicted Functional Partners:

SED42730.1

0.843

rpmG

0.838

rplV

0.782

rpmF

0.778

rplX

0.776

obg

0.757

SEC43855.1

0.753

rsfS

0.751

rplM

0.751

rplU

0.750

Your Current Organism:

Pseudomonas anguilliseptica

NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEC43855.1	SEC43920.1	SAMN05421553_0854	SAMN05421553_0855	Microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62.	Ribosome-associated protein; Belongs to the UPF0307 family.	0.753
SEC43920.1	SEC43855.1	SAMN05421553_0855	SAMN05421553_0854	Ribosome-associated protein; Belongs to the UPF0307 family.	Microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62.	0.753
SEC43920.1	SED42730.1	SAMN05421553_0855	SAMN05421553_2634	Ribosome-associated protein; Belongs to the UPF0307 family.	23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	0.843
SEC43920.1	obg	SAMN05421553_0855	SAMN05421553_2613	Ribosome-associated protein; Belongs to the UPF0307 family.	GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.	0.757
SEC43920.1	rplM	SAMN05421553_0855	SAMN05421553_2795	Ribosome-associated protein; Belongs to the UPF0307 family.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.751
SEC43920.1	rplU	SAMN05421553_0855	SAMN05421553_2611	Ribosome-associated protein; Belongs to the UPF0307 family.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.750
SEC43920.1	rplV	SAMN05421553_0855	SAMN05421553_0962	Ribosome-associated protein; Belongs to the UPF0307 family.	LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.782
SEC43920.1	rplX	SAMN05421553_0855	SAMN05421553_0956	Ribosome-associated protein; Belongs to the UPF0307 family.	LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.776
SEC43920.1	rpmF	SAMN05421553_0855	SAMN05421553_4674	Ribosome-associated protein; Belongs to the UPF0307 family.	LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.778
SEC43920.1	rpmG	SAMN05421553_0855	SAMN05421553_1985	Ribosome-associated protein; Belongs to the UPF0307 family.	LSU ribosomal protein L33P; Belongs to the bacterial ribosomal protein bL33 family.	0.838
SEC43920.1	rsfS	SAMN05421553_0855	SAMN05421553_2556	Ribosome-associated protein; Belongs to the UPF0307 family.	Ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.	0.751
SED42730.1	SEC43920.1	SAMN05421553_2634	SAMN05421553_0855	23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	Ribosome-associated protein; Belongs to the UPF0307 family.	0.843
SED42730.1	obg	SAMN05421553_2634	SAMN05421553_2613	23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.	0.946
SED42730.1	rplM	SAMN05421553_2634	SAMN05421553_2795	23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.782
SED42730.1	rplU	SAMN05421553_2634	SAMN05421553_2611	23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.812
SED42730.1	rplV	SAMN05421553_2634	SAMN05421553_0962	23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.791
SED42730.1	rplX	SAMN05421553_2634	SAMN05421553_0956	23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.791
SED42730.1	rpmF	SAMN05421553_2634	SAMN05421553_4674	23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.765
SED42730.1	rpmG	SAMN05421553_2634	SAMN05421553_1985	23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	LSU ribosomal protein L33P; Belongs to the bacterial ribosomal protein bL33 family.	0.751
SED42730.1	rsfS	SAMN05421553_2634	SAMN05421553_2556	23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	Ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.	0.792