Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SEC31679.1 | SEC43544.1 | SAMN05421553_0662 | SAMN05421553_0849 | Two-component system, unclassified family, sensor histidine kinase and response regulator. | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.878 |
| SEC31679.1 | SEC56678.1 | SAMN05421553_0662 | SAMN05421553_1069 | Two-component system, unclassified family, sensor histidine kinase and response regulator. | Two-component system, NtrC family, response regulator GlrR. | 0.766 |
| SEC31679.1 | SEC60614.1 | SAMN05421553_0662 | SAMN05421553_1135 | Two-component system, unclassified family, sensor histidine kinase and response regulator. | Amino acid ABC transporter substrate-binding protein, PAAT family. | 0.999 |
| SEC31679.1 | SED12059.1 | SAMN05421553_0662 | SAMN05421553_2066 | Two-component system, unclassified family, sensor histidine kinase and response regulator. | PAS domain S-box-containing protein. | 0.997 |
| SEC31679.1 | SED88765.1 | SAMN05421553_0662 | SAMN05421553_3564 | Two-component system, unclassified family, sensor histidine kinase and response regulator. | Multi-sensor hybrid histidine kinase. | 0.999 |
| SEC31679.1 | SED90210.1 | SAMN05421553_0662 | SAMN05421553_3600 | Two-component system, unclassified family, sensor histidine kinase and response regulator. | PAS domain S-box-containing protein. | 0.999 |
| SEC31679.1 | SED90286.1 | SAMN05421553_0662 | SAMN05421553_3602 | Two-component system, unclassified family, sensor histidine kinase and response regulator. | Two-component system, repressor protein LuxO. | 0.858 |
| SEC31679.1 | SEE29898.1 | SAMN05421553_0662 | SAMN05421553_4462 | Two-component system, unclassified family, sensor histidine kinase and response regulator. | Two-component system, unclassified family, sensor histidine kinase and response regulator. | 0.999 |
| SEC31679.1 | SEE76479.1 | SAMN05421553_0662 | SAMN05421553_5049 | Two-component system, unclassified family, sensor histidine kinase and response regulator. | PAS domain S-box-containing protein. | 0.999 |
| SEC31679.1 | ntrC | SAMN05421553_0662 | SAMN05421553_1884 | Two-component system, unclassified family, sensor histidine kinase and response regulator. | Nitrogen metabolism transcriptional regulator, NtrC, Fis family; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | 0.858 |
| SEC43544.1 | SEC31679.1 | SAMN05421553_0849 | SAMN05421553_0662 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Two-component system, unclassified family, sensor histidine kinase and response regulator. | 0.878 |
| SEC43544.1 | SEC56678.1 | SAMN05421553_0849 | SAMN05421553_1069 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Two-component system, NtrC family, response regulator GlrR. | 0.905 |
| SEC43544.1 | SEC60614.1 | SAMN05421553_0849 | SAMN05421553_1135 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Amino acid ABC transporter substrate-binding protein, PAAT family. | 0.854 |
| SEC43544.1 | SED12059.1 | SAMN05421553_0849 | SAMN05421553_2066 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | PAS domain S-box-containing protein. | 0.853 |
| SEC43544.1 | SED88765.1 | SAMN05421553_0849 | SAMN05421553_3564 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Multi-sensor hybrid histidine kinase. | 0.565 |
| SEC43544.1 | SED90210.1 | SAMN05421553_0849 | SAMN05421553_3600 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | PAS domain S-box-containing protein. | 0.883 |
| SEC43544.1 | SED90286.1 | SAMN05421553_0849 | SAMN05421553_3602 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Two-component system, repressor protein LuxO. | 0.853 |
| SEC43544.1 | SEE29898.1 | SAMN05421553_0849 | SAMN05421553_4462 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Two-component system, unclassified family, sensor histidine kinase and response regulator. | 0.566 |
| SEC43544.1 | SEE76479.1 | SAMN05421553_0849 | SAMN05421553_5049 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | PAS domain S-box-containing protein. | 0.847 |
| SEC43544.1 | ntrC | SAMN05421553_0849 | SAMN05421553_1884 | RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Nitrogen metabolism transcriptional regulator, NtrC, Fis family; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. | 0.849 |
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