Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEC59160.1Protein of unknown function. (190 aa)    
Predicted Functional Partners:
SEE15495.1
Pectinacetylesterase.
  
     0.725
SED19687.1
peptidyl-Asp metalloendopeptidase Metallo peptidase. MEROPS family M72.
  
     0.692
srkA
Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist; A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response.
       0.655
SEB96906.1
Hypothetical protein.
  
     0.583
SEE75183.1
Hypothetical protein.
  
     0.571
SEE05484.1
Hypothetical protein.
  
     0.562
SEE75154.1
Phage shock protein A (PspA) family protein.
  
     0.558
SEE75214.1
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain.
  
     0.555
SEE75269.1
AAA domain (dynein-related subfamily).
  
     0.553
SEC60041.1
Hypothetical protein.
  
     0.550
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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