STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED03216.1Type VI secretion system protein ImpL. (1179 aa)    
Predicted Functional Partners:
SED03277.1
Type VI secretion system protein ImpK.
 
 
 0.994
SED03327.1
Type VI secretion system protein ImpJ.
 
 
 0.990
SED04224.1
Type VI secretion system protein ImpC.
 
 
 0.981
SED03165.1
Serine/threonine protein phosphatase Stp1.
 
 
 0.978
SED03378.1
Type VI secretion system protein VasD.
 
  
 0.974
SED04272.1
Type VI secretion system protein ImpB.
 
 
 0.971
SED03429.1
FHA domain protein.
 
  
 0.970
SED03119.1
Serine/threonine-protein kinase Stk1.
 
 
 0.969
SED03963.1
Type VI secretion system protein ImpH.
 
 
 0.964
SEC92295.1
Type VI secretion system secreted protein Hcp.
 
 
 0.947
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.