Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SED04224.1Type VI secretion system protein ImpC. (491 aa)    
Predicted Functional Partners:
SED04272.1
Type VI secretion system protein ImpB.
 
 0.999
SED03963.1
Type VI secretion system protein ImpH.
 
 
 0.997
SEC92295.1
Type VI secretion system secreted protein Hcp.
 
 0.996
SED03216.1
Type VI secretion system protein ImpL.
 
 
 0.996
SED03277.1
Type VI secretion system protein ImpK.
 
  
 0.996
SED03327.1
Type VI secretion system protein ImpJ.
 
 
 0.996
SED03916.1
Type VI secretion system protein VasG; Belongs to the ClpA/ClpB family.
 
 
 0.996
SED04016.1
Type VI secretion system protein ImpG.
 
  
 0.993
SED04176.1
Type VI secretion system protein.
 
  
 0.991
SED04323.1
Type VI secretion system protein VasJ.
 
 
 0.983
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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