Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SED07538.1Peptide/nickel transport system substrate-binding protein. (501 aa)    
Predicted Functional Partners:
SEC45457.1
Dipeptide transport system permease protein.
 
 0.995
SEC45515.1
Dipeptide transport system permease protein.
 
 0.995
SED39186.1
Dipeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.988
SEC45121.1
Dipeptide transport system substrate-binding protein.
  
  
 
0.919
SEC45386.1
Dipeptide transport system substrate-binding protein.
  
  
 
0.916
SEC45321.1
Dipeptide transport system substrate-binding protein.
  
  
 
0.780
SEE21566.1
Microcin C transport system substrate-binding protein.
  
 
 0.585
SEE21512.1
Microcin C transport system substrate-binding protein; Manually curated.
  
 
0.584
SEE21608.1
Microcin C transport system permease protein.
 
  
 0.531
rpmB
LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
       0.502
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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