STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED08527.1Diguanylate cyclase/phosphodiesterase. (557 aa)    
Predicted Functional Partners:
SEC37320.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.881
SEC29397.1
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
0.869
SEE76479.1
PAS domain S-box-containing protein.
 
 0.844
SEC60614.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
  
 0.841
SED90210.1
PAS domain S-box-containing protein.
 
 0.839
SEC31679.1
Two-component system, unclassified family, sensor histidine kinase and response regulator.
 
 
 0.821
SED91544.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
  0.811
SEE44604.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
  0.802
SED93616.1
Na+/proline symporter.
  
 0.780
SED24277.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
     0.772
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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