STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED08684.1Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains. (238 aa)    
Predicted Functional Partners:
SED08856.1
Mu DNA-binding domain-containing protein.
 
     0.689
SED34892.1
Putative transposase.
 
     0.573
SED08721.1
Ner family transcriptional regulator.
       0.524
SED08801.1
Hypothetical protein.
       0.518
SEE01028.1
Putative transposase.
 
     0.515
SED09547.1
Mu-like prophage protein gp16.
 
     0.485
SEE00759.1
Mor transcription activator family protein.
  
     0.482
SED50530.1
Phage tail tape measure protein, TP901 family, core region.
  
    0.479
SED78846.1
Phage tail tape measure protein, TP901 family, core region.
  
    0.479
SED35568.1
Mor transcription activator family protein.
 
     0.469
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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