STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED08684.1Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains. (238 aa)    
Predicted Functional Partners:
SED58379.1
Superfamily II DNA or RNA helicase.
  
    0.693
SEE73273.1
Superfamily II DNA or RNA helicase.
  
    0.693
SED08856.1
Mu DNA-binding domain-containing protein.
 
     0.689
SED34892.1
Putative transposase.
 
     0.575
SED08721.1
Ner family transcriptional regulator.
       0.526
SED08801.1
Hypothetical protein.
       0.520
SEE01028.1
Putative transposase.
 
     0.517
SED09547.1
Mu-like prophage protein gp16.
 
     0.486
SEE00759.1
Mor transcription activator family protein.
  
     0.482
SED50530.1
Phage tail tape measure protein, TP901 family, core region.
  
    0.477
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.