Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SED09156.1Hypothetical protein. (110 aa)    
Predicted Functional Partners:
SED08986.1
AAA domain-containing protein.
       0.773
SED09040.1
Hypothetical protein.
       0.773
SED09101.1
Hypothetical protein.
       0.773
SED09215.1
Protein of unknown function.
       0.752
SED09272.1
Hypothetical protein.
       0.752
SED09325.1
Hypothetical protein.
       0.752
SED09381.1
Hypothetical protein.
       0.746
SED09438.1
Protein of unknown function.
       0.532
SED09487.1
Hypothetical protein.
       0.410
SED09547.1
Mu-like prophage protein gp16.
       0.410
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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