STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED09438.1Protein of unknown function. (223 aa)    
Predicted Functional Partners:
SED48127.1
Transcriptional regulator, Middle operon regulator (Mor) family.
 
     0.741
SED80843.1
Transcriptional regulator, Middle operon regulator (Mor) family.
 
     0.741
SED09215.1
Protein of unknown function.
 
    0.729
SED50082.1
Mu-like prophage protein gp36.
  
     0.713
SED79191.1
Mu-like prophage protein gp36.
  
     0.713
SED50323.1
Hypothetical protein.
  
     0.712
SED79027.1
Hypothetical protein.
  
     0.712
SED73993.1
Transcriptional regulator, Middle operon regulator (Mor) family.
 
     0.708
SED09547.1
Mu-like prophage protein gp16.
 
     0.702
SED75941.1
Hypothetical protein.
  
     0.699
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.