STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED09547.1Mu-like prophage protein gp16. (134 aa)    
Predicted Functional Partners:
SED08986.1
AAA domain-containing protein.
 
    0.867
SED09040.1
Hypothetical protein.
 
     0.858
SED09101.1
Hypothetical protein.
 
    0.858
SED09215.1
Protein of unknown function.
 
    0.856
SEE00976.1
AAA domain-containing protein.
 
    0.785
SED35013.1
AAA domain-containing protein.
 
    0.784
SEE01028.1
Putative transposase.
 
    0.780
SED09608.1
Transcriptional regulator, Middle operon regulator (Mor) family.
       0.779
SED34892.1
Putative transposase.
 
    0.779
SED36246.1
Mu-like prophage protein gp29.
 
    0.778
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.