STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED11768.1Transcriptional regulator, XRE family with cupin sensor. (185 aa)    
Predicted Functional Partners:
SED11827.1
Glycine/D-amino acid oxidase.
 
  
 0.898
SEC45257.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.831
argA
N-acetylglutamate synthase.
    
  0.786
SED08311.1
Transcriptional regulator, XRE family with cupin sensor.
 
0.755
SED11890.1
FAD binding domain-containing protein.
 
  
 0.752
SEE31341.1
Amino-acid N-acetyltransferase.
    
  0.720
SEC12657.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.719
SEE44280.1
Chorismate mutase.
  
 
 0.714
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
 0.713
SED12059.1
PAS domain S-box-containing protein.
  
  
 0.642
Your Current Organism:
Pseudomonas anguilliseptica
NCBI taxonomy Id: 53406
Other names: ATCC 33660, CCUG 35503, CIP 106711, DSM 12111, LMG 21629, LMG:21629, P. anguilliseptica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.